To install Optimizer in a custom location, simply extract the .tar.gz software package in your custom folder, then instead of running the galaxy/optimizer/common/install.go.user installation script, manually edit your login file (.cshrc or .login) and add the following lines (change the GOPTIMIZER_ROOT to reflect the correct path to your custom installation path):
 C Shell: csh (.cshrc) or tcsh (.tcshrc or .cshrc)
# Galaxy Optimizer setup
setenv GOPTIMIZER_ROOT <installation directory>/galaxy/optimizer
if ( -f ${GOPTIMIZER_ROOT}/common/setup.go.user.csh ) then
source ${GOPTIMIZER_ROOT}/common/setup.go.user.csh
endif
Bourne shell: sh (.profile)
Korne shell: ksh (.profile)
# Galaxy Optimizer setup
GOPTIMIZER_ROOT=<installation directory>/galaxy/optimizer
export GOPTIMIZER_ROOT
if [ -f ${GOPTIMIZER_ROOT}/common/setup.go.user.sh ]; then
. ${GOPTIMIZER_ROOT}/common/setup.go.user.sh
fi
To make the changes effective, either logout and login again, or refresh your environment:
source .cshrc (if your login sequence executes your .cshrc)
source .tcshrc (if your login sequence executes your .tcshrc)
. .profile (if your login sequence executes your .profile) |
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